Publications in peer reviewed journals

• Timothy Ragan, Lolahon R. Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Julian Taranda, Ignacio Arganda-Carreras, Jason Sutinand, H. Sebastian Seung, and Pavel Osten. "Serial two-photon tomography: an automated method for ex-vivo mouse brain imaging". Nature Methods, 2012. In press.
  
  
• Ignacio Arganda-Carreras, Carlos O. S. Sorzano, Philippe Thévenaz, Arrate Muñoz-Barrutia, Jan Kybic, Roberto Marabini, Jose Maria Carazo, and Carlos Ortiz-de-Solorzano. "Non-rigid consistent registration of 2D image sequences". Physics in Medicine and Biology, 55(20):6215, 2010.
  
  
• Ignacio Arganda-Carreras, Rodrigo Fernandez-Gonzalez, Arrate Muñoz Barrutia, and Carlos Ortiz-de-Solorzano. "3D Reconstruction of Histological Sections: Application to Mammary Gland Tissue". Microscopy Research and Technique, 73(11):1019–1029, October 2010.
  
  
• Michael Doube, Michal M. Klosowski, Ignacio Arganda-Carreras, Fabrice P. Cordelieres, Robert P. Dougherty, Jonathan S. Jackson, Benjamin Schmid, John R. Hutchinson, and Sandra J. Shefelbine. "BoneJ: Free and extensible bone image analysis in ImageJ". BONE, 47(6):1076–1079, December 2010.
  
  
• Albert Cardona, Stephan Saalfeld, Ignacio Arganda-Carreras, Wayne Pereanu, Johannes Schindelin, and Volker Hartenstein. "Identifying Neuronal Lineages of Drosophila by Sequence Analysis of Axon Tracts". Journal of Neuroscience, 30(22):7538–7553, June 2 2010.
  
  
• Carlos O. S. Sorzano, Ignacio Arganda-Carreras, Philippe Thévenaz, Ana Beloso, Gracia Morales, Israel Valdes, Carmen Perez-Garcia, Carmen Castillo, Elisa Garrido, and Michael Unser. "Elastic image registration of 2D gels for differential and repeatability studies". Proteomics, 8:62–65, 2008.
  
  
• Ignacio Arganda-Carreras, Carlos O. S. Sorzano, Roberto Marabini, Jose-Maria Carazo, Carlos Ortiz-de-Solorzano, and Jan Kybic. "Consistent and elastic registration of histological sections using vector-spline regularization". In Computer Vision Approaches to Medical Image Analysis, volume 4241 of Lecture Notes in Computer Science, pages 85–95. Springer Berlin/Heidelberg, May 2006. The free software from this publication can be downloaded from the bUnwarpJ site.